Liachko, I : rechercher sur Z-Library

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1

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome

VanBuren, Robert, Wai, Ching Man, Colle, Marivi, Wang, Jie, Sullivan, Shawn, Bushakra, Jill M, Liachko, Ivan, Vining, Kelly J, Dossett, Michael, Finn, Chad E, Jibran, Rubina, Chagné, David, Childs, Ke

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1009 KB

english, 2018

2

A viable allele of Mcm4 causes chromosome instability and mammary adenocarcinomas in mice

Shima, Naoko, Alcaraz, Ana, Liachko, Ivan, Buske, Tavanna R, Andrews, Catherine A, Munroe, Robert J, Hartford, Suzanne A, Tye, Bik K, Schimenti, John C

Journal:

Nature Genetics

Année:

2006

Langue:

english

Fichier:

PDF, 413 KB

english, 2006

3

Functional screen of human MCM2–7 variant alleles for disease-causing potential

Nathan A. Steere, Satoru Yamaguchi, Catherine A. Andrews, Ivan Liachko, Tomoka Nakamura, Naoko Shima

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Année:

2009

Langue:

english

Fichier:

PDF, 382 KB

english, 2009

4

Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast

Uri Keich, Hong Gao, Jeffrey S Garretson, Anand Bhaskar, Ivan Liachko, Justin Donato, Bik K Tye

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 301 KB

english, 2008

5

Novel features of ARS selection in budding yeastLachancea kluyveri

Ivan Liachko, Emi Tanaka, Katherine Cox, Shau Chee Claire Chung, Lu Yang, Arael Seher, Lindsay Hallas, Eugene Cha, Gina Kang, Heather Pace, Jasmine Barrow, Maki Inada, Bik-Kwoon Tye, Uri Keich

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2011

6

Combined informatic and expression screen identifies the novel DAF-16 target HLH-13

Nicole Liachko, Rachel Davidowitz, Siu Sylvia Lee

Journal:

Developmental Biology

Année:

2009

Langue:

english

Fichier:

PDF, 788 KB

english, 2009

7

Dopamine D2 Receptor Antagonism Suppresses Tau Aggregation and Neurotoxicity

McCormick, Allyson V., Wheeler, Jeanna M., Guthrie, Chris R., Liachko, Nicole F., Kraemer, Brian C.

Journal:

Biological Psychiatry

Année:

2013

Langue:

english

Fichier:

PDF, 358 KB

english, 2013

8

TDP-43 loss of function and gain of toxic function mutations cause motor dysfunction in animal models

Brian C. Kraemer, Chris R. Guthrie, Nicole R. Liachko, Jeanna M. Wheeler

Journal:

Alzheimer's & Dementia

Année:

2010

Langue:

english

Fichier:

PDF, 37 KB

english, 2010

9

Protein Kinase CK-1 Inhibitors As New Potential Drugs for Amyotrophic Lateral Sclerosis

Salado, Irene G., Redondo, Miriam, Bello, Murilo L., Perez, Concepción, Liachko, Nicole F., Kraemer, Brian C., Miguel, Laetitia, Lecourtois, Magalie, Gil, Carmen, Martinez, Ana, Perez, Daniel I.

Journal:

Journal of Medicinal Chemistry

Année:

2014

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2014

10

An autonomously replicating sequence for use in a wide range of budding yeasts

Liachko, Ivan, Dunham, Maitreya J.

Journal:

FEMS Yeast Research

Année:

2014

Langue:

english

Fichier:

PDF, 594 KB

english, 2014

11

CDC7 inhibition blocks pathological TDP-43 phosphorylation and neurodegeneration

Liachko, Nicole F., McMillan, Pamela J., Guthrie, Chris R., Bird, Thomas D., Leverenz, James B., Kraemer, Brian C.

Journal:

Annals of Neurology

Année:

2013

Langue:

english

Fichier:

PDF, 606 KB

english, 2013

12

Phosphorylation Promotes Neurotoxicity in a Caenorhabditis elegans Model of TDP-43 Proteinopathy

Liachko, N. F., Guthrie, C. R., Kraemer, B. C.

Journal:

Journal of Neuroscience

Année:

2010

Langue:

english

Fichier:

PDF, 2.69 MB

english, 2010

13

Novel DNA Binding Properties of the Mcm10 Protein from Saccharomyces cerevisiae

Eisenberg, S., Korza, G., Carson, J., Liachko, I., Tye, B.-K.

Journal:

Journal of Biological Chemistry

Année:

2009

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2009

14

Mcm10 Mediates the Interaction Between DNA Replication and Silencing Machineries

Liachko, I., Tye, B. K.

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2008

15

An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis

Million-Weaver, Samuel, Samadpour, Ariana N., Moreno-Habel, Daniela A., Nugent, Patrick, Brittnacher, Mitchell J., Weiss, Eli, Hayden, Hillary S., Miller, Samuel I., Liachko, Ivan, Merrikh, Houra

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 3.35 MB

english, 2015

16

Mcm10 Is Required for the Maintenance of Transcriptional Silencing in Saccharomyces cerevisiae

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 618 KB

english, 2005

17

Species-Level Deconvolution of Metagenome Assemblies with Hi-C-Based Contact Probability Maps

Burton, J. N., Liachko, I., Dunham, M. J., Shendure, J.

Journal:

G3 Genes|Genome|Genetics

Année:

2014

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2014

18

Alternative Mechanisms for Coordinating Polymerase and MCM Helicase

Lee, C., Liachko, I., Bouten, R., Kelman, Z., Tye, B. K.

Journal:

Molecular and Cellular Biology

Année:

2010

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2010

19

The Tau Tubulin Kinases TTBK1/2 Promote Accumulation of Pathological TDP-43

Liachko, Nicole F., McMillan, Pamela J., Strovas, Timothy J., Loomis, Elaine, Greenup, Lynne, Murrell, Jill R., Ghetti, Bernardino, Raskind, Murray A., Montine, Thomas J., Bird, Thomas D., Leverenz, J

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2014

20

Accurate identification of centromere locations in yeast genomes using Hi-C

Varoquaux, N., Liachko, I., Ay, F., Burton, J. N., Shendure, J., Dunham, M. J., Vert, J.-P., Noble, W. S.

Journal:

Nucleic Acids Research

Année:

2015

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2015

21

The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects

Sunshine, Anna B., Payen, Celia, Ong, Giang T., Liachko, Ivan, Tan, Kean Ming, Dunham, Maitreya J., Barton, Nick H.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 3.19 MB

english, 2015

22

A Comprehensive Genome-Wide Map of Autonomously Replicating Sequences in a Naive Genome

Liachko, Ivan, Bhaskar, Anand, Lee, Chanmi, Chung, Shau Chee Claire, Tye, Bik-Kwoon, Keich, Uri, Newlon, Carol S.

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.81 MB

english, 2010

23

GC-Rich DNA Elements Enable Replication Origin Activity in the Methylotrophic Yeast Pichia pastoris

Liachko, Ivan, Youngblood, Rachel A., Tsui, Kyle, Bubb, Kerry L., Queitsch, Christine, Raghuraman, M. K., Nislow, Corey, Brewer, Bonita J., Dunham, Maitreya J., Newlon, Carol S.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 4.42 MB

english, 2014

24

High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast

Liachko, I., Youngblood, R. A., Keich, U., Dunham, M. J.

Journal:

Genome Research

Année:

2013

Langue:

english

Fichier:

PDF, 788 KB

english, 2013

25

Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres

Tsai, H.-J., Baller, J. A., Liachko, I., Koren, A., Burrack, L. S., Hickman, M. A., Thevandavakkam, M. A., Rusche, L. N., Berman, J.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2014

26

Loss of RAD-23 Protects Against Models of Motor Neuron Disease by Enhancing Mutant Protein Clearance

Jablonski, A. M., Lamitina, T., Liachko, N. F., Sabatella, M., Lu, J., Zhang, L., Ostrow, L. W., Gupta, P., Wu, C.-Y., Doshi, S., Mojsilovic-Petrovic, J., Lans, H., Wang, J., Kraemer, B., Kalb, R. G.

Journal:

Journal of Neuroscience

Année:

2015

Langue:

english

Fichier:

PDF, 4.98 MB

english, 2015

27

Tau tubulin kinases promote proteinopathy in both ftld-tau and FTLD-TDP-43

Kraemer, Brian C., Strovas, Timothy C., Liachko, Nicole, McMillan, Pamela

Journal:

Alzheimer's & Dementia

Année:

2015

Langue:

english

Fichier:

PDF, 62 KB

english, 2015

28

High Throughput Analyses of Budding Yeast ARSs Reveal New DNA Elements Capable of Conferring Centromere-Independent Plasmid Propagation

Hoggard, T., Liachko, I., Burt, C., Meikle, T., Jiang, K., Craciun, G., Dunham, M. J., Fox, C. A.

Journal:

G3 Genes|Genome|Genetics

Année:

2016

Langue:

english

Fichier:

PDF, 3.13 MB

english, 2016

29

The phosphatase calcineurin regulates pathological TDP-43 phosphorylation

Liachko, Nicole F., Saxton, Aleen D., McMillan, Pamela J., Strovas, Timothy J., Currey, Heather N., Taylor, Laura M., Wheeler, Jeanna M., Oblak, Adrian L., Ghetti, Bernardino, Montine, Thomas J., Keen

Journal:

Acta Neuropathologica

Année:

2016

Langue:

english

Fichier:

PDF, 3.44 MB

english, 2016

30

TDP-43/FUS in motor neuron disease: Complexity and challenges

Guerrero, Erika N., Wang, Haibo, Mitra, Joy, Hegde, Pavana M., Stowell, Sara E., Liachko, Nicole F., Kraemer, Brian C., Garruto, Ralph M., Rao, K.S., Hegde, Muralidhar L.

Journal:

Progress in Neurobiology

Année:

2016

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2016

31

Evolution of protein phosphorylation across 18 fungal species

Studer, R. A., Rodriguez-Mias, R. A., Haas, K. M., Hsu, J. I., Vieitez, C., Sole, C., Swaney, D. L., Stanford, L. B., Liachko, I., Bottcher, R., Dunham, M. J., de Nadal, E., Posas, F., Beltrao, P., Vi

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 660 KB

english, 2016

32

CALCINEURIN PROTECTS AGAINST PATHOLOGICAL TDP-43 ACCUMULATION IN FRONTOTEMPORAL LOBAR DEGENERATION

Liachko, Nicole, Saxton, Aleen, Strovas, Timothy C., McMillan, Pamela, Kraemer, Brian C.

Journal:

Alzheimer's & Dementia

Année:

2016

Langue:

english

Fichier:

PDF, 52 KB

english, 2016

33

TAU TUBULIN KINASE ACTIVATION COINCIDES WITH NEUROPATHOLOGY IN DEMENTIA

Taylor, Laura, McMillan, Pamela, Liachko, Nicole, Strovas, Timothy C., Kraemer, Brian C.

Journal:

Alzheimer's & Dementia

Année:

2016

Langue:

english

Fichier:

PDF, 44 KB

english, 2016

34

Characterization of a panARS-based episomal vector in the methylotrophic yeast Pichia pastoris for recombinant protein production and synthetic biology applications

Camattari, Andrea, Goh, Amelia, Yip, Lian Yee, Tan, Andy Hee Meng, Ng, Sze Wai, Tran, Anthony, Liu, Gaowen, Liachko, Ivan, Dunham, Maitreya J., Rancati, Giulia

Journal:

Microbial Cell Factories

Année:

2016

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2016

35

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

Bickhart, Derek M, Rosen, Benjamin D, Koren, Sergey, Sayre, Brian L, Hastie, Alex R, Chan, Saki, Lee, Joyce, Lam, Ernest T, Liachko, Ivan, Sullivan, Shawn T, Burton, Joshua N, Huson, Heather J, Nystro

Journal:

Nature Genetics

Année:

2017

Langue:

english

Fichier:

PDF, 1.65 MB

english, 2017

36

Improvement of the threespine stickleback genome using a Hi-C-based Proximity-Guided Assembly

Peichel, Catherine L., Sullivan, Shawn T., Liachko, Ivan, White, Michael A.

Journal:

Journal of Heredity

Année:

2017

Langue:

english

Fichier:

PDF, 485 KB

english, 2017

37

Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C

Heil, Caiti Smukowski, Burton, Joshua N., Liachko, Ivan, Friedrich, Anne, Hanson, Noah A., Morris, Cody L., Schacherer, Joseph, Shendure, Jay, Thomas, James H., Dunham, Maitreya J.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 805 KB

english, 2017

38

Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data

Jibran, Rubina, Dzierzon, Helge, Bassil, Nahla, Bushakra, Jill M., Edger, Patrick P., Sullivan, Shawn, Finn, Chad E., Dossett, Michael, Vining, Kelly J., VanBuren, Robert, Mockler, Todd C., Liachko, I

Journal:

Horticulture Research

Année:

2018

Langue:

english

Fichier:

PDF, 3.73 MB

english, 2018

39

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

Stewart, Robert D., Auffret, Marc D., Warr, Amanda, Wiser, Andrew H., Press, Maximilian O., Langford, Kyle W., Liachko, Ivan, Snelling, Timothy J., Dewhurst, Richard J., Walker, Alan W., Roehe, Rainer

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2018

40

Pathological phosphorylation of tau and TDP-43 by TTBK1 and TTBK2 drives neurodegeneration

Taylor, Laura M., McMillan, Pamela J., Liachko, Nicole F., Strovas, Timothy J., Ghetti, Bernardino, Bird, Thomas D., Dirk Keene, C., Kraemer, Brian C.

Journal:

Molecular Neurodegeneration

Année:

2018

Langue:

english

Fichier:

PDF, 2.55 MB

english, 2018

41

Fast construction of a reference genome: challenges and opportunities using ‘Royal Gala’ apple as a case study

Deng, C.H., Tian, Y., Zhang, C., Chagné, D., Gleave, A., Gardiner, S.E., Bus, V., Sullivan, S., Liachko, I., Cong, P., Yao, J.-L.

Journal:

Acta Horticulturae

Année:

2018

Langue:

english

Fichier:

PDF, 417 KB

english, 2018

42

Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae

Winter, David J., Ganley, Austen R. D., Young, Carolyn A., Liachko, Ivan, Schardl, Christopher L., Dupont, Pierre-Yves, Berry, Daniel, Ram, Arvina, Scott, Barry, Cox, Murray P., Richardson, Paul M.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 3.59 MB

english, 2018

43

Motor neuron disease-associated loss of nuclear TDP-43 is linked to DNA double-strand break repair defects

Mitra, Joy, Guerrero, Erika N., Hegde, Pavana M., Liachko, Nicole F., Wang, Haibo, Vasquez, Velmarini, Gao, Junling, Pandey, Arvind, Taylor, J. Paul, Kraemer, Brian C., Wu, Ping, Boldogh, Istvan, Garr

Journal:

Proceedings of the National Academy of Sciences

Année:

2019

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2019

44

Tau tubulin kinases in proteinopathy

Taylor, Laura M., McMillan, Pamela J., Kraemer, Brian C., Liachko, Nicole F.

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 619 KB

english, 2019

45

Linking the resistome and plasmidome to the microbiome

Stalder, Thibault, Press, Maximilian O., Sullivan, Shawn, Liachko, Ivan, Top, Eva M.

Journal:

The ISME Journal

Année:

2019

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2019

46

Resistance and resilience to Alzheimer’s disease pathology are associated with reduced cortical pTau and absence of limbic-predominant age-related TDP-43 encephalopathy in a community-based cohort

Latimer, Caitlin S., Burke, Bridget T., Liachko, Nicole F., Currey, Heather N., Kilgore, Mitchell D., Gibbons, Laura E., Henriksen, Jonathan, Darvas, Martin, Domoto-Reilly, Kimiko, Jayadev, Suman, Gra

Journal:

Acta Neuropathologica Communications

Année:

2019

Langue:

english

Fichier:

PDF, 4.03 MB

english, 2019

47

Resistance and resilience to Alzheimer’s disease pathology are associated with reduced cortical pTau and absence of limbic-predominant age-related TDP-43 encephalopathy in a community-based cohort

Latimer, Caitlin S., Burke, Bridget T., Liachko, Nicole F., Currey, Heather N., Kilgore, Mitchell D., Gibbons, Laura E., Henriksen, Jonathan, Darvas, Martin, Domoto-Reilly, Kimiko, Jayadev, Suman, Gra

Journal:

Acta Neuropathologica Communications

Année:

2019

Fichier:

PDF, 4.03 MB

2019

48

Constitutive XBP-1s-mediated activation of the endoplasmic reticulum unfolded protein response protects against pathological tau

Waldherr, Sarah M., Strovas, Timothy J., Vadset, Taylor A., Liachko, Nicole F., Kraemer, Brian C.

Journal:

Nature Communications

Année:

2019

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2019

49

Divergent evolutionary trajectories following speciation in two ectoparasitic honey bee mites

Techer, Maeva A., Rane, Rahul V., Grau, Miguel L., Roberts, John M. K., Sullivan, Shawn T., Liachko, Ivan, Childers, Anna K., Evans, Jay D., Mikheyev, Alexander S.

Journal:

Communications Biology

Année:

2019

Langue:

english

Fichier:

PDF, 2.82 MB

english, 2019

50

Phenotypic Suppression of ALS/FTD-Associated Neurodegeneration Highlights Mechanisms of Dysfunction

Bartoletti, Mathieu, Bosco, Daryl A., Da Cruz, Sandrine, Lagier-Tourenne, Clotilde, Liachko, Nicole, Markmiller, Sebastian, Webster, Kristin M., Wharton, Kristi A.

Journal:

Journal of Neuroscience

Année:

2019

Fichier:

PDF, 385 KB

2019